Mazzetta, C., Brooks, S.P. & Freeman, S.N. 2007. On smoothing trends in population index modelling. Biometrics, 63: 1007-1014.

Abstract

In this article, we consider the UK Common Birds Census counts and their use in monitoring bird abundance. We use a state-space modelling approach within a Bayesian framework to describe population level trends over time and contribute to the alert system used by the British Trust for Ornithology. We account for potential overdispersion and excess zero counts by modelling the observation process with a zero-inflated negative binomial, while the system process is described by second-order polynomial growth models. In order to provide a biological motivation for the amount of smoothing applied to the observed series the system variance is related to the demographic characteristics of the species, so as to help the specification of its prior distribution. In particular, the available information on productivity and survival is used to formulate prior expectations on annual percentage changes in the population level and then used to constrain the variance of the system process. We discuss an example of how to interpret alternative choices for the degree of smoothing and how these relate to the classification of species, over time, into conservation lists.

Key words: Dynamic GLM; Population trends; Reversible jump MCMC; State space; Zero-inflated negative binominal.

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